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Small business bookkeeping mistakes you are probably making

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Small business bookkeeping mistakes………I want to start this by saying something important, so lean in for a second.

If you’re messing up your bookkeeping, it does not mean you’re bad at business.

It means you’re human.

I know this because I am a resident of Queens, NYC, and I once spent an entire afternoon trying to reconcile my books while my neighbor practiced saxophone… aggressively… through the wall. I gave up, ordered dumplings, and told myself I’d “deal with it tomorrow.”

Tomorrow came. And went. And then it was tax season and I was sweating through a hoodie.

That’s when I realized how many small business bookkeeping mistakes I was making without even knowing they were mistakes. They felt… normal. Logical. Harmless.

They were not harmless.

So I’m gonna walk you through the biggest ones—the sneaky ones, the “everyone does this” ones, the ones you’re probably doing right now while nodding along like, okay wow rude but accurate.

No judgment. I’ve done all of these. Some more than once.


The shoebox method (aka “I’ll remember later”)

Let’s start with the classic.

Receipts in:

  • Your wallet
  • Your backpack
  • That random drawer with batteries and menus

You tell yourself, “I’ll log these later.”

Later is a lie we tell ourselves when we’re tired.

I once found a receipt in my coat pocket from last winter. Not even the same tax year. The coat was offended. I was offended. Nobody won.

This is one of the most common bookkeeping mistakes for small businesses—thinking memory counts as a system.

It doesn’t.

Your brain is busy. Your business is busy. Receipts deserve a home. Not a scavenger hunt.


Mixing personal and business money (I did this for… too long)

Okay. Deep breath.

If you are using one bank account for everything—rent, groceries, business expenses, that random late-night Uber—please know this comes from love:

Stop. Please. Stop.

I did this in the beginning because opening another account felt like “too much.” Like something Real Business Owners do. Not me. Just a person with a laptop and ambition.

But when it came time to check my numbers? Absolute chaos.

Was that coffee a meeting? Or just me being tired?
Was that Target run office supplies or… socks?

Answer: I have no idea.

This is one of those small business bookkeeping mistakes that seems harmless until it’s very much not.

Separate accounts = instant clarity. Even if everything else is messy, that one move helps so much.


“I don’t make enough yet to worry about this”

Ah yes. My favorite lie.

I told myself this constantly:

  • “I’m small.”
  • “It’s just a side thing.”
  • “I’ll get organized when I make more.”

Here’s the problem.

Bookkeeping habits don’t magically improve when money increases. They just get louder.

Messy systems with more money = louder mess.

I didn’t realize this until I actually was making more… and had no idea where it was going. Which is a terrible feeling, by the way. Like pouring water into a bucket with a hole and pretending it’s fine.


Not reconciling regularly (or ever)

Confession: I used to avoid reconciling my books like it was a confrontation.

Because it kind of is.

Reconciling means checking that what you think happened matches what actually happened. Bank vs books. Reality vs vibes.

And sometimes reality says:
“Nope. You forgot stuff.”

I’d skip months. Then try to do it all at once and panic. Then close my laptop and pace my apartment like that would help.

Regular reconciliation isn’t fun. But it’s way less painful than the once-a-year financial horror movie.


Guessing categories instead of learning them

I used to categorize expenses like I was on a game show.

“Office supplies?”
“Marketing?”
“Meals???”

Sure. Whatever. Click.

This is a subtle but serious bookkeeping error for small businesses. Because categories matter. They affect taxes. Reports. Decisions.

You don’t need to become an expert overnight. But learning the basics saves future-you a lot of confusion.

Also—side note—emotional support coffee is not an official category. I checked.


Forgetting about taxes until it’s too late

You ever have a moment where your stomach drops for no reason?

That’s usually taxes remembering you.

I didn’t set aside money at first. At all. I told myself I’d “figure it out.”

Spoiler: I figured it out when the bill arrived.

Not planning for taxes is a rite of passage, apparently. But it doesn’t have to be your rite of passage.

Even a rough estimate helps. Even a separate savings account labeled “DO NOT TOUCH” helps.

Trust me on this one.


Waiting too long to ask for help

I waited way too long to talk to a bookkeeper.

Not because I didn’t need one. Because I thought needing help meant failing.

It doesn’t.

It means you’re scaling, learning, or simply tired.

Sometimes one conversation can fix months of confusion. And no, they don’t judge you. They’ve seen worse. Much worse.

Probably involving a shoebox.


Using tools you hate (this matters more than people admit)

If your bookkeeping system makes you miserable, you won’t use it.

Period.

I don’t care how “powerful” the software is. If it feels like punishment, it’s the wrong tool.

This is a sneaky small business bookkeeping mistake—choosing tools based on features instead of actual usage.

The best system is the one you’ll open regularly. That’s it. That’s the rule.


Thinking bookkeeping is just “admin stuff”

This one took me the longest to unlearn.

Bookkeeping isn’t busywork. It’s not just paperwork or not something you “get out of the way.”

It’s feedback.

It tells you:

  • What’s working
  • What’s not
  • Where you’re leaking money
  • Where you’re growing

Ignoring it is like running a marathon with your eyes closed. Possible? Maybe. Smart? Absolutely not.


The good news (because there is good news)

If you recognized yourself in any of this—congrats. You’re normal.

These small business bookkeeping mistakes don’t mean you’re failing. They mean you’re learning in real time.

You don’t need perfection.
You need awareness.
And one small fix at a time.

Start with:

  • Separate accounts
  • One tool you don’t hate
  • Weekly or biweekly check-ins

That’s enough.


Final thought about small business bookkeeping mistakes

Back in 8th grade, I wore two different shoes to school. Not on purpose. It was a Monday.

I survived.

You’ll survive messy bookkeeping too. But you don’t have to live in it.

Fixing even one of these small business bookkeeping mistakes will make your business feel lighter. Quieter. More under control.

And honestly? That feeling is addictive.

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